If I understand what you're saying by, "Can I wire the feed to a junction box and have a wire with a male plug end tied into it," The possibility of the male plug being hot and unplugged would violate the electrical code.
I also don't understand the objection to automation. If the stove is hot and electricity goes off when you aren't there, is there a possibility of it overheating and causing a fire? You can use an AC relay wired to be held closed from the house power and relax to the generator side when there is no house power. When the house power goes off, the relay releases to the generator contacts (assuming the generator comes on automatically).
For a manual system I would use a 3 way switch to select the power source from "Off," "House" or "Generator." That way there is only one possible connection at a time. Manual motor switches start on page 17 of the document at the link below.
http://www.cooperindustries.com/content/dam/public/wiringdevices/literature/lit_pdf/D-Switches_Mtr%20Cntrls_ANP.pdf
I know this setup would allow power to backfeed the panel or the male plug to be hot should both switches be left in the on position. I guess I am assuming I would only ever be the one operating this setup and would be safe about it. If a 3-way switch can be used as you described that would be the obvious choice, but I didn't know if they could be used that way. To be certain, I can wire a 3-way switch with two different power sources and depending on the switch position I would be selecting only one at a time to be fed to the blower motor. In other words when the panel feed is "on" the generator feed is automatically "off" and vice versa? Is there a special name for this type of switch with the center position "off" to both feeds?
Would there be any draw backs to simply putting an outlet on a dedicated circuit and just running a corded plug from the blowers?
If the stove depends on the fan distributing the heat to keep it from overheating, that's my concern about a system that's not automatic. What happens if the electricity goes off and you're not there? If it doesn't depend on the fan for cooling, using an outlet on a dedicated circuit sounds OK to me but I wouldn't invite the electrical inspector over for coffee. :-)